Publications
Research publications organized by methodological and applied research directions.
Google ScholarMultiple Testing and E-values
A General Framework for Multiple Testing via E-value Aggregation and Data-Dependent Weighting
PreprintGuanxun Li, Xianyang Zhang
2025
Data-Dependent Weighted E-value Aggregation for Fusion Learning
Jiahang GaoStudent, Hongyu Chen, Guanxun LiCorresponding author
Mathematics. 2025
Watermarking in Large Language Models
Adaptive Testing for Segmenting Watermarked Texts From Language Models
Xingchi Li, Xiaochi LiuStudent, Guanxun LiCorresponding author
Stat. 2025
A Likelihood-Based Approach for Watermark Detection
Xingchi Li, Guanxun LiCo-first author, Xianyang Zhang
International Conference on Artificial Intelligence and Statistics (AISTATS). 2025
Segmenting Watermarked Texts From Language Models
Xingchi Li, Guanxun LiCo-first author, Xianyang Zhang
Advances in Neural Information Processing Systems (NeurIPS). 2024
Bayesian Computation
Importance is Important: Generalized Markov Chain Importance Sampling Methods
PreprintGuanxun Li, Aaron Smith, Quan Zhou
2024
Bayesian Multi-Task Variable Selection with an Application to Differential DAG Analysis
Guanxun Li, Quan Zhou
Journal of Computational and Graphical Statistics. 2024
Fast Replica Exchange Stochastic Gradient Langevin Dynamics
PreprintGuanxun Li, Guang Lin, Zecheng Zhang, Quan Zhou
2023
Computational Biology
scTenifoldNet and scTenifoldKnk: A package suite for single-cell gene regulatory network construction, comparison, and perturbation analysis
Yan Zhong, Daniel Osorio, Guanxun Li, Qian Xu, Yongjian Yang, Jianhua Z. Huang, James J. Cai
Statistical Theory and Related Fields. 2025
Gene knockout inference with variational graph autoencoder learning single-cell gene regulatory networks
Yongjian Yang, Guanxun Li, Yan Zhong, Qian Xu, Bo-Jia Chen, Yu-Te Lin, Robert S. Chapkin, James J. Cai
Nucleic Acids Research. 2023
Interpretable modeling of time-resolved single-cell gene-protein expression with CrossmodalNet
Yongjian Yang, Yu-Te Lin, Guanxun Li, Yan Zhong, Qian Xu, James J. Cai
Briefings in Bioinformatics. 2023
Robust Differential Abundance Analysis of Microbiome Sequencing Data
Guanxun Li, Lu Yang, Jun Chen, Xianyang Zhang
Genes. 2023
scTenifoldXct: A semi-supervised method for predicting cell-cell interactions and mapping cellular communication graphs
Yongjian Yang, Guanxun Li, Yan Zhong, Qian Xu, Yu-Te Lin, Cristhian Roman-Vicharra, Robert S. Chapkin, James J. Cai
Cell Systems. 2023
scInTime: A computational method leveraging single-cell trajectory and gene regulatory networks to identify master regulators of cellular differentiation
Qian Xu, Guanxun Li, Daniel Osorio, Yan Zhong, Yongjian Yang, Yu-Te Lin, Xiuren Zhang, James J. Cai
Genes. 2022
scTenifoldKnk: An efficient virtual knockout tool for gene function predictions via single-cell gene regulatory network perturbation
Daniel Osorio, Yan Zhong, Guanxun Li, Qian Xu, Yongjian Yang, Yanan Tian, Robert S. Chapkin, Jianhua Z. Huang, James J. Cai
Patterns. 2022
scTenifoldNet: A machine learning workflow for constructing and comparing transcriptome-wide gene regulatory networks from single-cell data
Daniel Osorio, Yan Zhong, Guanxun Li, Jianhua Z. Huang, James J. Cai
Patterns. 2020
Single-cell expression variability implies cell function
Daniel Osorio, Xue Yu, Yan Zhong, Guanxun Li, Erchin Serpedin, Jianhua Z. Huang, James J. Cai
Cells. 2019